An information-theoretic metric based method for selecting clustering attribute
Kỷ yếu Hội nghị Khoa học Quốc gia lần thứ IX “Nghiên cứu cơ bản và ứng dụng Công nghệ thông tin (FAIR'9)”; Cần Thơ, ngày 4-5/8/2016
DOI: 10.15625/vap.2016.0005
AN INFORMATION-THEORETIC METRIC BASED METHOD
FOR SELECTING CLUSTERING ATTRIBUTE
Pham Cong Xuyen, Đo Si Truong, Nguyen Thanh Tung
Lac Hong University
ABSTRACT—Clustering problem appears in many different fields like Data Mining, Pattern Recognition, Bioinfor-matics, etc. The
basic objective of clustering is to group objects into clusters so that objects in the same cluster are more similar to one another than
they are to objects in other clusters. Recently, many researchers have contributed to categorical data clustering, where data objects
are made up of non-numerical attributes. Especially, rough set theory based attribute selection clustering approaches for
categorical data have attracted much attention. The key to these approaches is how to select only one attribute that is the best to
cluster the objects at each time from many candidates of attributes.
In this paper, we review three rough set based techniques: Total Roughness (TR), Min-Min Roughness (MMR) and Maximum
Dependency Attribute (MDA), and propose MAMD (Minimum value of Average Mantaras Distance), an alternative algorithm for
hierarchical clustering attribute selection. MAMD uses Mantaras metric which is an information-theoretic metric on the set of
partitions of a finite set of objects and seeks to determine a clustering attribute such that the average distance between the partition
generated by this attribute and the partitions generated by other attributes of the objects has a minimum value. To evaluate and
compare MAMD with three rough set based techniques, we use the concept of average intra-class similarity to measure the
clustering quality of selected attribute. The experiment results show that the clustering quality of the attribute selected by our
method is higher than that of attributes selected by TR, MMR and MDA methods.
Keywords— Data Mining, Hierarchical clustering, Categorical data, Rough sets, Clustering attribute selection.
I. INTRODUCTION
During the last two decades, data mining has emerged as a rapidly growing interdisciplinary field which merges
together databases, statistics, machine learning and related areas in order to extract useful knowledge from data (Han
and Kamber, 2006).
Clustering is one of fundamental operations in data mining. It can be defined as as follows. Let
{
}
be the set of objects, where each is an dimensional vector in the given feature space. The
clustering activity is to find clusters/groups of objects in such a way that objects within the same cluster have a high
degree of similarity, while objects belonging to different clusters have a high degree of dissimilarity [6].
Clustering problem appears in many different domains such as pattern recognition, computer vision, biology,
medicine, information retrieval, etc. At present, there exist a large number of clustering algorithms in the literature.
Types of clustering are divided broadly into hierarchical and non-hierarchical clustering. Non-hierarchical clustering
methods create a single partition of the dataset optimizing a criterion function. Hierarchical clustering methods create a
sequence of nested partitions of the dataset.
Most of the earlier works on clustering has been focused on numerical data whose inherent geometric properties
can be exploited to naturally define distance functions between data points. However, data mining applications
frequently involve many datasets that also consist of categorical attributes on which distance functions are not naturally
defined. Recently, clustering categorical data have attracted much attention from the data mining research community
[1, 4, 7, 8, 11, 12, 14]. One of the techniques of categorical data clustering was implemented by introducing a series
of clustering attributes, in which one of the attributes is selected and used to divide the objects at each time until all
objects are clustered. To this, one practical problem is faced: for many candidates of attributes, we need to select only
one at each time that is the best attribute to cluster the objects according to some predefined criterion.
Recently, there has been works in the area of applying rough set theory to handle uncertainty in the process of
selecting clustering attributes [7, 9, 11, 12]. Mazlack et al. [11] proposed a technique using the average of the
accuracy of approximation in the rough set theory called total roughness (TR), where the higher the total roughness is,
the higher the accuracy of selecting clustering attribute. Parmar et al. [12] proposed the MMR (Min–Min–Roughness)
algorithm, which is a „„purity‟‟ rough set-based hierarchical clustering algorithm for categorical data. The MMR
algorithm determines the clustering attribute by MR (Min–Roughness) criterion. However, as Herawan et al. has
proven in [7], MMR is the complementary of TR and with this technique, the complexity is still an issue due to all
attributes are considered to obtain the clustering attribute. In order to solve these problems, Herawan et al. [7] proposed
a new technique called maximum dependency attributes (MDA), which is based on rough set theory by taking into
32
AN INFORMATION-THEORETIC METRIC BASED METHOD FOR SELECTING CLUSTERING ATTRIBUTE
account the dependency of attributes of the database. According to Herawan et al. [7], MDA technique provides better
performance than TR and MMR. However, there is an inherent similarity among TR, MMR and MDA, although they
look different. The similarity lies that the values of the three techniques are all mainly determined by the cardinality of
lower approximation of an attribute with respect to other attributes.
In this paper, we review three rough set based techniques: Total Roughness (TR), Min-Min Roughness (MMR)
and Maximum Dependency Attribute (MDA), and propose MAMD (Minimum value of Average Mantaras Distance),
an alternative algorithm for hierarchical clustering attribute selection. MAMD uses Mantaras metric which is an
information-theoretic metric on the set of partitions of a finite set of objects and seeks to determine a clustering
attribute such that the average distance between the partition generated by this attribute and the partitions generated by
other attributes of the objects has a minimum value. To evaluate and compare MAMD with three rough set based
techniques, we use the concept of average intra-class similarity to measure the clustering quality of selected attribute.
The experiment results show that the clustering quality of the attribute selected by our method is higher than that of
attributes selected by TR, MMR and MDA methods.
II. PRELIMINARIES
In this section, some basic notions are briefly reviewed. In Section 2.1, we provide the basic concepts of rough set
theory [13] and in Section 2.2 we describe Mantaras metric on the set of partitions of a finite set [10].
A. Rough Set Theory
An information system is a quadruple tuple , where is a non-empty finite set of objects, is a
nonempty finite set of attributes,
where is a set of all values of attribute , and is a
⋃
function, called information function, that assigns value a for every .
Definition 1. Let be an information system, . Two elements is said to be -
indiscernible in if and only if , for every .
We denote the indiscernibility relation induced by the set of attributes by . Obviously, is an
equivalence relation and it induces unique partition (clustering) of . The partition of induced by in
[ ]
denoted by and the equivalence class in the partition containing , denoted by .
Definition 2. Let be an information system, and . The -lower approximation of ,
denoted by and -upper approximation of , denoted by , respectively, are defined by
{
| [ ]
}
{
| [ ]
}
and
(1)
These definitions state that object certainly belongs to , whereas object could belong to .
Obviously, there is and is said to be definable if . Otherwise, is said to be rough with B-
boundary
Definition 3. Let be an information system, and . The accuracy of approximation of
with respect to is defined as:
| |
| |
Throughout the paper, | | denotes the cardinality of .
Obviously, . If then . The -boundary of is empty, and is crisp with
respect to . If , then . The -boundary of is not empty, and is rough with respect to .
Definition 4. Let be an information system, and . The roughness of with respect to
is defined as:
| |
| |
Definition 5. Let be an information system. For , it is said that depends on in a degree
, denoted by , if
∑
| |
| |
Pham Cong Xuyen, Đo Si Truong, Nguyen Thanh Tung
33
B. Mantaras metric
{
}
Definition 4. Let be an information system, and . The entropy of partition
is defined as:
∑
|
|⁄| |
where , and we define .
{
}
{
}
Definition 5. Let be an information system, , and .
The conditional entropy of partition with respect to partition is defined as:
|
∑ ( ) ∑ ( | ) ( | )
where ( | ) | |⁄| |, and
{
}
{
}
Definition 6. Let be an information system, , and .
The joint entropy of partitions and is defined as:
∑ ∑ ( ) ( )
⁄| |
where ( ) | | , and
From formulas (4) (5) and (6) we have:
|
Proposition 1. [10] The measure
|
|
is a metric on the set of partitions of , that is, for any partitions , and on it satisfies
and the equality holds iff
(i)
(ii)
(iii)
.
Note that, from formula (8), we can write:
III. THREE ROUGH SET-BASED TECHNIQUES
Let be an information system , , refers to the set of values of attribute ,
is a subset of objects having one specific value, , of attribute , that is, is a class of objects induced by
indiscernibility relation , refers to the lower approximation, and refers to the upper
approximation with respect to .
A. TR (Total Roughness) Technique [11]
Input: Dataset (information system) without clustering attribute
Output: Clustering attribute
Begin
Step 1: Compute the equivalence classes using the indiscernibility relation
on each attribute.
with respect to all
Step 2: For each determine its mean roughness
, , by the following formula
|
|
∑
|
|
|
34
AN INFORMATION-THEORETIC METRIC BASED METHOD FOR SELECTING CLUSTERING ATTRIBUTE
where
| |
|
| |
Step 3: For each compute its total roughness with respect to , , by
the following formula
|
|
∑
| |
Step 4. Select the attribute with the maximum value of TR as clustering
attribute, i.e.
{ ( )}
End
B. MMR (Min–Min-Roughness) Technique [12]
Input: Dataset (information system) without clustering attribute
Output: Clustering attribute
Begin
Step 1: Compute the equivalence classes using the indiscernibility relation
on each attribute.
with respect to all
Step 2: For each determine its mean roughness
, , by the following formula
|
|
∑
|
|
|
where
| |
|
| |
Step 3: For each determine its minimum roughness MR by the following
formula
( )
Step 4. Select the attribute with the minimum value of MR as clustering
attribute, i.e.
{ ( )}
End
C. MDA (Maximum degree of Dependency of Attributes) Technique [7]
Input: Dataset (information system) without clustering attribute
Output: Clustering attribute
Begin
Step 1. Compute the equivalence classes using the indiscernibility relation
on each attribute.
Step 2. For each determine the dependency degree of attribute with
respect to all , where . by the following formula
∑
| |
⁄
| |
Step 3. Select the maximum of dependency degree of each attribute
( ) as following
Pham Cong Xuyen, Đo Si Truong, Nguyen Thanh Tung
35
( )
Step 4. Select the attribute with the maximum value of MD as clustering
attribute, i.e.
{ ( )}
End
IV. MAMD (MINIMUM AVERAGE MANTARAS DISTANCE) TECHNIQUE
In this section we present MAMD technique, which is based on Minimum Average Mantaras Distance, to select
clustering attribute.
Definition 7. Let be an information system, and is an attribute, the Average Mantaras Distance
of to all , , is defined by the following formula:
|
|
∑
( )
| |
where are the partitions of induced by and respectively.
In the above definitions, ( ) is a measurement to the distance between and From the view of
clustering, the lower is, the higher the crispness of the clustering. Based on the above definition, we present the
MAMD algorithm as follows.
Input: Dataset (information system) without clustering attribute
Output: Clustering attribute
Begin
Step 1. For each attribute compute the equivalence classes of partition
induced by indiscernibility relation .
Step 2. For each attribute compute the condition entropy of partition
with respect to partition , where :
|
∑ ( ) ∑ ( | ) ( | )
and ( | ) | |⁄| |,
{
}
{
}
where
,
and
Step 3. For each every pair , where , compute the distance between
two partitions and using Mantaras metric:
( ) ( | ) ( | )
Step 4. For each attribute compute the Average Mantaras Distance
according to (22).
Step 5. Select the attribute with the lowest as clustering attribute.
End
Let us illustrate the MAMD algorithm by an example.
Example. Table 1 shows Credit dataset as in [7]. There are ten objects with five categorical attributes: Magazine
Promotion (MP), Watch Promotion (WP), Life Insurance Promotion (LIP), Credit Card Insurance (CCI), and Sex (S).
First, we deal with attribute MP. The partition of induced by attribute MP is:
{{1, 2, 4, 5, 7, 9, 10}, {3, 6, 8}}.
We have:
36
AN INFORMATION-THEORETIC METRIC BASED METHOD FOR SELECTING CLUSTERING ATTRIBUTE
The partition of induced by attribute WP is:
{{1, 3, 5, 6, 7, 9}, {2, 4, 8, 10}}
Table 1. The Credit dataset
MP WP LIP CCI
S
#
1
2
3
4
5
6
7
8
9
yes no
yes yes yes
no no no
no
no Male
no Female
no Male
yes yes yes yes Male
yes no yes
no no no
no Female
no Female
yes no yes yes Male
no yes
yes no
10 yes yes yes
no
no
no Male
no Male
no Female
The partition of induced by {MP,WP} is:
{{1, 5, 7, 9}, {2, 4, 10}, {3, 6}, {8}}
{ }
( { })
Applying Eq. (10), we get the distance between and as follows:
( { })
With the same process, we can get the distance between MP and other attributes:
The Average Mantaras Distance of attribute MP can be computed by Eq.(22) as:
With the same process as MP, we can deal with other attributes . The and of all attributes are
summarized in Table 2.
Table 2. All values of distance and average distance between attributes in Table 1
Distance (w.r.t….)
Attribute
MP
WP
LIP
0.000 1.722 1.678 1.902 1.786
CCI
S
MP
WP
LIP
CCI
S
0.000 1.840
1.722 0.000 1.249
1.678 1.249 0.000 1.351
1.446
1.412
1.902 1.722 1.351 0.000 1.704
From Table 2, we can see that attribute CCI has the smallest ; therefore CCI is selected as clustering
attribute using MAMD algorithm.
V. COMPARISON TESTS
A. clustering quality measure
The four techniques TR, MMR, MDA and MAMD techniques use different methods for selecting clustering
attribute. Measuring the clustering quality of selected attribute in a just manner is a non-trivial task. Since the goal of
cluster analysis is to group data with similar characteristics, we use average intra-class similarity to measure the
quality.
Definition 8. Let be an information system and suppose that all attributes in are categorical. Then
the similarity between two objects and in is defined as:
Pham Cong Xuyen, Đo Si Truong, Nguyen Thanh Tung
37
{
}
|{ | }|
( )
| |
Definition 9. Let be an information system. Suppose is selected as clustering attribute and the
{
}
clustering (partition) induced by is where { |}, . The average
|
similarity ( ) of object with respect to other objects in is defined as:
|
|
∑
( )
( )
|
|
Definition 10. Let be an information system. Suppose is selected as clustering attribute and the
{
}
clustering (partition) induced by is where { |} , . The intra-
|
class similarity ( ) of cluster is defined as:
|
|
∑
( )
|
|
Definition 11. Let be an information system. Suppose is selected as clustering attribute and the
{
}
clustering (partition) induced by is where { |}, . The average
|
intra-class similarity ( ) of clustering induced by is defined as:
∑
( )
The higher the average intra-class similarity is the higher the clustering quality of the selected attribute.
B. Datasets for testing and results
The data sets of four test cases, as in [7], are presented in Table 1, Table 3, Table 4 and Table 5. These are Credit,
Animal world, Parmar, and student‟s enrollment qualification data sets.
Table 3. The animal world data set
Animal
Hair Teeth
Eye
Feather Feet Eat
Milk Fly Swim
Tiger
Y
Y
Y
Y
N
N
N
N
N
pointed forward
pointed forward
N
N
N
N
Y
Y
Y
Y
N
claw meat
claw meat
hoof grass
hoof grass
claw grain
Y
Y
Y
Y
N
N
N
N
N
N
N
N
N
N
N
Y
Y
N
Y
Y
N
N
N
Y
Y
N
N
Cheetah
Giraffe
Zebra
blunt
blunt
N
side
side
Ostrich
Penguin
Albatross
Eagle
side
N
side
web
fish
N
side
craw grain
craw meat
N
forward
Viper
pointed forward
N
meat
Table 4. The Parmar data set
Rows
1
2
3
Big
Blue
Hard
Indefinite Plastic Negative
Medium Red
Small
Moderate Smooth
Yellow Soft Fuzzy
Wood Neutral
Plush Positive
Plastic Negative
4
Medium Blue
Moderate Fuzzy
5
Small
Big
Yellow Soft
Green Hard
Indefinite Plastic Neutral
Smooth Wood Positive
6
7
Small
Small
Big
Yellow Hard
Yellow Soft
Indefinite Metal Positive
Indefinite Plastic Positive
8
9
Green
Hard
Smooth
Wood Neutral
Plastic Neutral
10
Medium Green
Moderate Smooth
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AN INFORMATION-THEORETIC METRIC BASED METHOD FOR SELECTING CLUSTERING ATTRIBUTE
Table 5. The student‟s enrollment qualification data set
Student Degree English Experience
IT
Maths Programming Statistics
Medium
1
2
PhD
Good
Good
Good
Good
Good
Good
Good
Good
Good
Good
Good
Good
Medium Medium
Medium Medium
Medium Medium
PhD
M.Sc
Good
Medium
3
4
Good
Medium
M.Sc
Medium
5
6
7
M.Sc
M.Sc
B.Sc
Medium Medium
Medium Medium
Medium Medium Medium
Medium Medium Medium
Medium
Medium
Medium
Medium
Bad
Medium Medium
Medium Medium
Good
Good
Good
Good
8
B.Sc
Good
We have installed all the four techniques TR, MMR, MDA and MAMD, in R programming language using
RoughSets package.
As the results of computations, Table 6 shows the clustering attributes chosen by the techniques in each data set.
Table 6. Clustering attributes selected by the techniques in data set
Datasets
Credit
CCI
Animal
Hair
Parmar
Var1
Var1
Var1
Var2
Student
TR
Experience
Experience
Experience
Degree
MMR
MDA
CCI
Hair
CCI
Hair
MAMD CCI
Teeth
From Table 6, we can see that for all the four considered data sets, three techniques TR, MMR and MDA choose
same attribute as the clustering attribute. Our technique MAMD chooses same attribute CCI in Credit data set, but
other attributes in Animal world, Parmar and Student‟s enrollment qualification data sets.
Now, let us measure the clustering quality of attributes chosen by TR, MMR, MDA and MAMD in these three
data sets.
We take attribute Hair in Credit data set as an example to calculate the average intra-class similarity.
The partition of induced by attribute Hair consists of two equivalence classes:
= { }
{ }
We take animal Tiger in as an example to calculate the similarity, average similarity. Applying Eq. (25), we
have
Applying Eq. (26), the average similarity of Tiger with respect to other animals in is calculated as follows:
With the same process, the similarity and average similarity of other animals in are calculated and summarized
as in Table 7.
Table 7. The similarity, and of all animals in induced by Hair
Animal Tiger Cheetah Giraffe Zebra
Tiger
-
1.000
-
0.444
0.444
-
0.444 0.630 0.630
0.444 0.630
Cheetah 1.000
Giraffe 0.444
0.444
0.444
1.000 0.630
Zebra
0.444
1.000
-
0.630
Pham Cong Xuyen, Đo Si Truong, Nguyen Thanh Tung
39
Applying Eq. (27), the intra-class similarity of is calculated below.
Using the same way, we obtain .
Lastly, using Eq. (28), the average intra-class similarity is calculated as follows:
With the same process, we have computed the average intra-class similarity of clustering induced by Teeth in
“Animal world”, by Var1 and by Var2 in Parmar, by Experience and by Degree in Student dataset. The computation
results are given in Table 8.
Table 8. The average intra-class similarity ( ) of clustering
induced by attributes in the datasets
Selected attributes and their values
Animal
Hair 0.587
Hair 0.587
Hair 0.587
Parmar
Student
TR
Var1 0.536 Experience 0.638
Experience 0.638
Var1 0.536
MMR
MDA
Experience 0.638
Var1 0.536
MAMD Teeth 0.784 Var2 0.555 Degree 0.770
The results in Table 8 show that the clustering quality of attribute selected using MAMD technique is higher than
that of attribute selected by TR, MMR and MDA techniques.
VI. CONCLUSION
In the recent years, some techniques applying rough set theory for selecting clustering attributes have been
proposed. However, although they look different, there is an inherent similarity among them, and the computational
complexity is still an issue.
In this paper, we review three rough set based techniques: Total Roughness (TR), Min-Min Roughness (MMR)
and Maximum Dependency Attribute (MDA), and propose MAMD (Minimum value of Average Mantaras Distance),
an alternative algorithm for hierarchical clustering attribute selection. MAMD uses Mantaras metric which is an
information-theoretic metric on the set of partitions of a finite set of objects and seeks to determine a clustering
attribute such that the average distance between the partition generated by this attribute and the partitions generated by
other attributes of the objects has a minimum value. To evaluate and compare MAMD with three rough set based
techniques, we use the concept of average intra-class similarity to measure the clustering quality of selected attribute.
The experiment results show that the clustering quality of the attribute selected by our method is higher than that of
attributes selected by TR, MMR and MDA methods. The proposed approach could be integrated into clustering
algorithm based on attributes selection for categorical data.
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MỘT PHƯƠNG PHÁP LỰA CHỌN THUỘC TÍNH GOM CỤM
SỬ DỤNG METRIC LÝ THUYẾT THÔNG TIN
Phạm Công Xuyên, Đỗ Sĩ Trường, Nguyễn Thanh Tùng
TÓM TẮT — Bài toán gom cụm dữ liệu xuất hiện trong nhiều lĩnh vực khác nhau như Khai thác dữ liệu, Nhận dạng, Tin-sinh học,
vv. Mục tiêu cơ bản của gom cụm là nhóm đối tượng thành các cụm sao cho các đối tượng trong cùng một cụm thì tương tự như
nhau hơn là các đối tượng từ các cụm khác nhau. Gần đây, nhiều nhà nghiên cứu quan tâm đến vấn đề gom cụm dữ liệu phạm trù
(categorical), trong đó các đối tượng dữ liệu được mô tả bởi các thuộc tính không phải thuộc tính số. Đặc biệt, phương pháp tiếp
cận sử dụng lý thuyết tập thô trong gom cụm phân cấp (hierarchical) dữ liệu phạm trù đã thu hút nhiều sự chú ý. Chìa khóa của các
phương pháp này là làm thế nào để chọn được một thuộc gom cụm tốt nhất tại mỗi thời điểm trong số nhiều thuộc tính ứng viên.
Trong bài báo này, chúng tôi xem xét ba kỹ thuật dựa trên lý thuyết tập thô: Total Roughness (TR), Min-Min Roughness (MMR) và
Maximum Dependency Attribute (MDA), và đề xuất MAMD (Minimum value of Average Mantaras Distance), một thuật toán mới
cho việc lựa chọn thuộc tính phân cụm theo tiếp cận phân cấp. MAMD sử dụng metric Mantaras, một metric lý thuyết thông tin trên
tập các phân hoạch của một tập hợp gồm hữu hạn các đối tượng và tìm cách xác định thuộc tính gom cụm sao cho khoảng cách
trung bình giữa phân hoạch sinh ra bởi thuộc tính này và các phân hoạch sinh ra bởi các thuộc tính khác đạt giá trị nhỏ nhất. Để
đánh giá và so sánh MAMD với ba kỹ thuật dựa trên lý thuyết tập thô, chúng tôi sử dụng khái niệm “Độ tương tự trung bình bên
trong cụm” của một phép gom cụm để đo lường chất lượng gom cụm của thuộc tính được chọn. Kết quả thực nghiệm cho thấy chất
lượng gom cụm của thuộc tính chọn được bằng phương pháp của chúng tôi là cao hơn so với các thuộc tính chọn bởi các phương
pháp TR, MMR và MDA. Do đó, MAMD có thể được sử dụng như là một kỹ thuật hiệu quả lựa chọn thuộc tính trong phân cụm
phân cấp.
Từ khóa — Gom cụm, Lý thuyết tập thô, Lựa chọn thuộc tính, Mantaras metric, Gom cụm phân cấp.
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